Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimbrial protein | DN590_25065 | Not Available | Negative | 5011252 - 5012316 | 37840.7 |
| type 1 fimbrial protein | DN590_25070 | Not Available | Negative | 5012313 - 5012918 | 21998.6 |
| molecular chaperone | DN590_25075 | Not Available | Negative | 5012931 - 5013707 | 28523.5 |
| papc/fimd family outer membrane usher protein | DN590_25080 | Not Available | Negative | 5013734 - 5016205 | 91229.3 |
| type 1 fimbrial protein | DN590_25085 | Not Available | Negative | 5016247 - 5016795 | 20186.9 |
| type 1 fimbrial protein | DN590_25090 | Not Available | Negative | 5016865 - 5017413 | 18848.0 |
| hypothetical protein | DN590_25095 | Not Available | Negative | 5017800 - 5019032 | 46529.6 |
| hypothetical protein | DN590_25100 | Not Available | Negative | 5019146 - 5019367 | 8335.88 |
| vwa domain-containing protein | DN590_25105 | Not Available | Negative | 5019440 - 5021446 | 74184.8 |
| duf3150 domain-containing protein | DN590_25110 | Not Available | Negative | 5021523 - 5022650 | 42759.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

