Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iv | DN590_25015 | Not Available | Negative | 5000584 - 5001639 | 39682.2 |
| transpeptidase | DN590_25020 | Not Available | Positive | 5001971 - 5002711 | 27984.6 |
| class ii glutamine amidotransferase | DN590_25025 | Not Available | Negative | 5002682 - 5003449 | 28565.1 |
| d-sedoheptulose 7-phosphate isomerase | DN590_25030 | Not Available | Negative | 5003561 - 5004142 | 20939.1 |
| acyl-coa dehydrogenase | DN590_25035 | Not Available | Positive | 5004382 - 5006826 | 89160.6 |
| amidohydrolase | DN590_25040 | Not Available | Positive | 5006937 - 5007704 | 29160.7 |
| hypothetical protein | DN590_25045 | Not Available | Positive | 5007884 - 5008294 | 15230.2 |
| eal domain-containing protein | DN590_25050 | Not Available | Negative | 5008310 - 5009029 | 27708.9 |
| tat pathway signal sequence | DN590_25055 | Not Available | Negative | 5009031 - 5010698 | 61808.8 |
| type 1 fimbrial protein | DN590_25060 | Not Available | Negative | 5010700 - 5011242 | 19333.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

