Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium transporter trka | DN590_24910 | Not Available | Negative | 4982490 - 4983866 | 50338.7 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase | DN590_24915 | Not Available | Negative | 4983888 - 4985177 | 48322.3 |
| methionyl-trna formyltransferase | DN590_24920 | Not Available | Negative | 4985229 - 4986176 | 34084.5 |
| peptide deformylase | DN590_24925 | Not Available | Negative | 4986191 - 4986700 | 19287.4 |
| dna-protecting protein dpra | DN590_24930 | Not Available | Positive | 4986830 - 4987954 | 41251.7 |
| duf494 domain-containing protein | DN590_24935 | Not Available | Positive | 4987926 - 4988399 | 18453.1 |
| hypothetical protein | DN590_24940 | Not Available | Positive | 4988426 - 4988968 | 19933.1 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | DN590_24945 | Not Available | Positive | 4988973 - 4989545 | 20529.6 |
| shikimate dehydrogenase | DN590_24950 | Not Available | Positive | 4989547 - 4990368 | 29409.2 |
| duf1488 domain-containing protein | DN590_24955 | Not Available | Positive | 4990365 - 4990622 | 9861.55 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

