Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l36 | DN590_24860 | Not Available | Positive | 4977632 - 4977748 | 4364.59 |
| 30s ribosomal protein s13 | DN590_24865 | Not Available | Positive | 4977895 - 4978251 | 13149.2 |
| 30s ribosomal protein s11 | DN590_24870 | Not Available | Positive | 4978268 - 4978657 | 13845.7 |
| 30s ribosomal protein s4 | DN590_24875 | Not Available | Positive | 4978691 - 4979311 | 23456.5 |
| dna-directed rna polymerase subunit alpha | DN590_24880 | Not Available | Positive | 4979337 - 4980326 | 36499.9 |
| 50s ribosomal protein l17 | DN590_24885 | Not Available | Positive | 4980367 - 4980750 | 14395.5 |
| hypothetical protein | DN590_24890 | Not Available | Positive | 4980858 - 4981226 | 13956.6 |
| zn(2+)-responsive transcriptional regulator | DN590_24895 | Not Available | Positive | 4981237 - 4981662 | 16190.3 |
| ribosome alternative rescue factor arfa | DN590_24900 | Not Available | Positive | 4981720 - 4981938 | 8141.83 |
| large-conductance mechanosensitive channel protein mscl | DN590_24905 | Not Available | Negative | 4981935 - 4982348 | 15040.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

