Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol 2-dehydrogenase | DN590_24400 | Not Available | Negative | 4891392 - 4892378 | 36184.1 |
| hypothetical protein | DN590_24405 | Not Available | Negative | 4892461 - 4892706 | 9051.02 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | DN590_24410 | Not Available | Negative | 4892723 - 4894648 | 70436.0 |
| methylmalonate-semialdehyde dehydrogenase (coa acylating) | DN590_24415 | Not Available | Negative | 4894660 - 4896165 | 54106.1 |
| murr/rpir family transcriptional regulator | DN590_24420 | Not Available | Positive | 4896459 - 4897313 | 31494.5 |
| hypothetical protein | DN590_24425 | Not Available | Positive | 4897558 - 4898124 | 20986.2 |
| efflux transporter periplasmic adaptor subunit | DN590_24430 | Not Available | Positive | 4898405 - 4899559 | 41532.9 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DN590_24435 | Not Available | Positive | 4899588 - 4902704 | 112421.0 |
| abc transporter substrate-binding protein | DN590_24440 | Not Available | Negative | 4902913 - 4903260 | 12780.7 |
| acid-resistance protein | DN590_24445 | Not Available | Negative | 4903260 - 4903856 | 22315.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

