Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein | DN590_24350 | Not Available | Positive | 4873410 - 4874825 | 50430.4 |
| conjugal transfer protein trag | DN590_24355 | Not Available | Positive | 4874834 - 4878649 | 134495.0 |
| attachment protein | DN590_24360 | Not Available | Positive | 4879230 - 4882772 | 126184.0 |
| 5-deoxy-glucuronate isomerase | DN590_24365 | Not Available | Negative | 4882991 - 4883809 | 30806.3 |
| myo-inosose-2 dehydratase | DN590_24370 | Not Available | Negative | 4883819 - 4884709 | 32736.9 |
| 5-dehydro-2-deoxygluconokinase | DN590_24375 | Not Available | Negative | 4884724 - 4886628 | 69915.7 |
| gfo/idh/moca family oxidoreductase | DN590_24380 | Not Available | Negative | 4886641 - 4887774 | 41216.5 |
| abc transporter permease | DN590_24385 | Not Available | Negative | 4887783 - 4888811 | 36391.8 |
| sugar abc transporter atp-binding protein | DN590_24390 | Not Available | Negative | 4888823 - 4890370 | 56369.0 |
| sugar abc transporter substrate-binding protein | DN590_24395 | Not Available | Negative | 4890424 - 4891353 | 32888.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

