Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s49 family peptidase | DN590_24300 | Not Available | Negative | 4860299 - 4861480 | 42848.7 |
| duf4400 domain-containing protein | DN590_24305 | Not Available | Negative | 4861491 - 4862153 | 25731.0 |
| hypothetical protein | DN590_24310 | Not Available | Negative | 4862140 - 4863249 | 42545.0 |
| hypothetical protein | DN590_24315 | Not Available | Negative | 4863249 - 4865333 | 78128.3 |
| helicase | DN590_24320 | Not Available | Negative | 4865333 - 4868479 | 117811.0 |
| hypothetical protein | DN590_24325 | Not Available | Negative | 4868489 - 4869226 | 28200.7 |
| plasmid transfer protein | DN590_24330 | Not Available | Negative | 4869223 - 4869708 | 19092.0 |
| trhr | DN590_24335 | Not Available | Positive | 4870468 - 4871268 | 30327.4 |
| hypothetical protein | DN590_24340 | Not Available | Positive | 4871270 - 4871782 | 19140.0 |
| thioredoxin family protein | DN590_24345 | Not Available | Positive | 4872374 - 4873420 | 39306.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

