Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4165 domain-containing protein | DN590_23990 | Not Available | Positive | 4799361 - 4801781 | 88572.3 |
| hypothetical protein | DN590_23995 | Not Available | Negative | 4802807 - 4803463 | 25128.8 |
| repb family plasmid replication initiator protein | DN590_24000 | Not Available | Negative | 4803859 - 4804914 | 39717.4 |
| duf4165 domain-containing protein | DN590_24005 | Not Available | Negative | 4806055 - 4808511 | 89966.9 |
| hypothetical protein | DN590_24010 | Not Available | Positive | 4808884 - 4809510 | 22922.2 |
| hypothetical protein | DN590_24015 | Not Available | Negative | 4809568 - 4809849 | 10314.1 |
| hypothetical protein | DN590_24020 | Not Available | Negative | 4809836 - 4810291 | 17151.0 |
| duf4942 domain-containing protein | DN590_24025 | Not Available | Negative | 4810513 - 4812204 | 63368.5 |
| dna-binding protein | DN590_24030 | Not Available | Negative | 4812452 - 4813615 | 43222.7 |
| dna modification methylase | DN590_24035 | Not Available | Positive | 4813985 - 4814797 | 30729.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

