Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone | DN590_23840 | Not Available | Positive | 4778345 - 4778899 | 20569.3 |
| duf1097 domain-containing protein | DN590_23845 | Not Available | Positive | 4778953 - 4779483 | 18700.5 |
| curli production assembly/transport protein csgg | DN590_23850 | Not Available | Negative | 4779530 - 4780363 | 30501.9 |
| curli production assembly/transport protein csgf | DN590_23855 | Not Available | Negative | 4780389 - 4780802 | 14971.7 |
| curli production assembly/transport protein csge | DN590_23860 | Not Available | Negative | 4780828 - 4781226 | 15094.7 |
| transcriptional regulator csgd | DN590_23865 | Not Available | Negative | 4781231 - 4781881 | 24919.9 |
| is5/is1182 family transposase | DN590_23870 | Not Available | Negative | 4782079 - 4782388 | 11830.2 |
| hypothetical protein | DN590_23875 | Not Available | Negative | 4782390 - 4782590 | 7725.26 |
| hypothetical protein | DN590_23880 | Not Available | Negative | 4782641 - 4783432 | 28849.9 |
| hypothetical protein | DN590_23885 | Not Available | Negative | 4783662 - 4783919 | 9298.73 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

