Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyr operon leader peptide | DN590_23375 | Not Available | Positive | 4704670 - 4704771 | 3851.85 |
| hypothetical protein | DN590_23380 | Not Available | Positive | 4704752 - 4704805 | 1893.36 |
| aspartate carbamoyltransferase | DN590_23385 | Not Available | Positive | 4704808 - 4705743 | 34365.2 |
| aspartate carbamoyltransferase regulatory subunit | DN590_23390 | Not Available | Positive | 4705757 - 4706218 | 17159.6 |
| 2-iminobutanoate/2-iminopropanoate deaminase | DN590_23395 | Not Available | Positive | 4706295 - 4706681 | 13562.2 |
| hypothetical protein | DN590_23400 | Not Available | Negative | 4706716 - 4706934 | 8326.8 |
| hypothetical protein | DN590_23670 | Not Available | Negative | 4745785 - 4746369 | 21749.0 |
| glycosyltransferase | DN590_23675 | Not Available | Negative | 4746371 - 4747294 | 34638.3 |
| gtra family protein | DN590_23680 | Not Available | Negative | 4747291 - 4747653 | 13391.7 |
| hypothetical protein | DN590_23685 | Not Available | Positive | 4747866 - 4748225 | 12830.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

