Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_23320 | Not Available | Positive | 4694504 - 4694698 | 7274.92 |
| leucyl aminopeptidase | DN590_23325 | Not Available | Positive | 4694808 - 4696319 | 54876.0 |
| dna polymerase iii subunit chi | DN590_23330 | Not Available | Positive | 4696439 - 4696882 | 16518.5 |
| valine--trna ligase | DN590_23335 | Not Available | Positive | 4696882 - 4699737 | 108061.0 |
| gnat family n-acetyltransferase | DN590_23340 | Not Available | Positive | 4699944 - 4700447 | 18116.7 |
| topoisomerase ii | DN590_23345 | Not Available | Negative | 4700474 - 4701304 | 30674.8 |
| trna isopentenyl-2-thiomethyl-a-37 hydroxylase miae | DN590_23350 | Not Available | Negative | 4701469 - 4702227 | 28917.8 |
| ribonuclease e inhibitor rrab | DN590_23355 | Not Available | Negative | 4702279 - 4702704 | 15918.8 |
| ornithine carbamoyltransferase | DN590_23360 | Not Available | Positive | 4702868 - 4703872 | 36830.2 |
| yhch/yjgk/yial family protein | DN590_23365 | Not Available | Negative | 4703979 - 4704431 | 16809.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

