Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_23000 | Not Available | Positive | 4620796 - 4621110 | 11517.6 |
| dna-binding protein | DN590_23005 | Not Available | Positive | 4621107 - 4621328 | 8666.55 |
| hypothetical protein | DN590_23010 | Not Available | Positive | 4621464 - 4622228 | 28925.0 |
| sigma-70 family rna polymerase sigma factor | DN590_23015 | Not Available | Positive | 4622312 - 4622488 | 6633.07 |
| inovirus gp2 family protein | DN590_23020 | Not Available | Positive | 4622691 - 4623311 | 23935.3 |
| is1 family transposase | DN590_23030 | Not Available | Positive | 4623388 - 4623562 | 6344.48 |
| glutamate racemase | DN590_23035 | Not Available | Negative | 4623923 - 4624774 | 31073.6 |
| vitamin b12/cobalamin outer membrane transporter | DN590_23040 | Not Available | Negative | 4624719 - 4626575 | 68541.1 |
| trna (uridine(54)-c5)-methyltransferase trma | DN590_23045 | Not Available | Positive | 4626943 - 4628043 | 42097.4 |
| yijd family membrane protein | DN590_23050 | Not Available | Negative | 4628116 - 4628475 | 13010.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

