Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_22950 | Not Available | Negative | 4611727 - 4612074 | 13065.4 |
| hypothetical protein | DN590_22955 | Not Available | Negative | 4612067 - 4612336 | 10568.3 |
| hypothetical protein | DN590_22960 | Not Available | Negative | 4612557 - 4612841 | 11126.2 |
| hypothetical protein | DN590_22965 | Not Available | Negative | 4612855 - 4614042 | 45888.5 |
| integrase | DN590_22970 | Not Available | Positive | 4616027 - 4616608 | 21661.2 |
| hypothetical protein | DN590_22975 | Not Available | Positive | 4616619 - 4616810 | 7135.49 |
| tir domain-containing protein | DN590_22980 | Not Available | Positive | 4617032 - 4618177 | 43798.5 |
| hypothetical protein | DN590_22985 | Not Available | Negative | 4618273 - 4618431 | 5951.26 |
| Trna-thr | Not Available | Not Available | Positive | 4619000 - 4619082 | Not Available |
| duf4102 domain-containing protein | DN590_22995 | Not Available | Positive | 4619231 - 4620538 | 49357.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

