Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na+/h+ antiporter nhac | DN590_22900 | Not Available | Positive | 4602323 - 4603774 | 51163.0 |
| pyridoxal phosphate-dependent aminotransferase | DN590_22905 | Not Available | Positive | 4603787 - 4604968 | 44560.5 |
| integrase | DN590_22910 | Not Available | Positive | 4605338 - 4606561 | 46408.7 |
| hypothetical protein | DN590_22915 | Not Available | Negative | 4606592 - 4606870 | 10494.2 |
| hypothetical protein | DN590_22920 | Not Available | Negative | 4607210 - 4609054 | 66899.1 |
| hypothetical protein | DN590_22925 | Not Available | Negative | 4609047 - 4609247 | 7219.7 |
| major capsid protein e | DN590_22930 | Not Available | Negative | 4609385 - 4610422 | 37828.6 |
| hypothetical protein | DN590_22935 | Not Available | Negative | 4610441 - 4610818 | 13209.8 |
| hypothetical protein | DN590_22940 | Not Available | Negative | 4610822 - 4611055 | 8562.52 |
| hypothetical protein | DN590_22945 | Not Available | Positive | 4611105 - 4611383 | 10732.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

