Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | DN590_22540 | Not Available | Negative | 4532941 - 4534266 | 50336.2 |
| xre family transcriptional regulator | DN590_22545 | Not Available | Negative | 4534271 - 4534564 | 10878.9 |
| hypothetical protein | DN590_22550 | Not Available | Negative | 4534965 - 4536353 | 50627.2 |
| hypothetical protein | DN590_22555 | Not Available | Negative | 4536358 - 4536855 | 16625.3 |
| hypothetical protein | DN590_22560 | Not Available | Negative | 4537058 - 4537714 | 23614.9 |
| hypothetical protein | DN590_22565 | Not Available | Negative | 4538083 - 4538394 | 11513.1 |
| hypothetical protein | DN590_22570 | Not Available | Negative | 4538373 - 4538765 | 14597.0 |
| hypothetical protein | DN590_22575 | Not Available | Positive | 4539686 - 4540672 | 36844.9 |
| atp-dependent helicase | DN590_22580 | Not Available | Positive | 4540669 - 4542708 | 76532.6 |
| hypothetical protein | DN590_22585 | Not Available | Negative | 4542711 - 4542965 | 9590.38 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

