Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional activator aaer | DN590_22430 | Not Available | Negative | 4515698 - 4516627 | 34354.8 |
| protein aaex | DN590_22435 | Not Available | Positive | 4516812 - 4517015 | 7893.11 |
| p-hydroxybenzoic acid efflux pump subunit aaea | DN590_22440 | Not Available | Positive | 4517023 - 4517955 | 34629.4 |
| p-hydroxybenzoic acid efflux pump subunit aaeb | DN590_22445 | Not Available | Positive | 4517961 - 4519928 | 73279.7 |
| hypothetical protein | DN590_22450 | Not Available | Positive | 4520048 - 4520326 | 10996.1 |
| duf1471 domain-containing protein | DN590_22455 | Not Available | Negative | 4520384 - 4520650 | 9282.06 |
| transcriptional regulator argr | DN590_22460 | Not Available | Negative | 4521028 - 4521498 | 17051.7 |
| malate dehydrogenase | DN590_22470 | Not Available | Positive | 4521935 - 4522870 | 32232.1 |
| serine endoprotease degs | DN590_22475 | Not Available | Negative | 4523018 - 4524085 | 37599.4 |
| serine endoprotease degq | DN590_22480 | Not Available | Negative | 4524175 - 4525542 | 47423.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

