Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | DN590_22380 | Not Available | Negative | 4501978 - 4502952 | 34485.6 |
| rnase e specificity factor csrd | DN590_22385 | Not Available | Positive | 4503178 - 4505118 | 73175.9 |
| hypothetical protein | DN590_22390 | Not Available | Negative | 4505127 - 4505327 | 7325.12 |
| rod shape-determining protein | DN590_22395 | Not Available | Positive | 4505425 - 4506468 | 36954.7 |
| rod shape-determining protein mrec | DN590_22400 | Not Available | Positive | 4506535 - 4507557 | 36814.8 |
| rod shape-determining protein mred | DN590_22405 | Not Available | Positive | 4507558 - 4508046 | 18715.7 |
| septum formation inhibitor maf | DN590_22410 | Not Available | Positive | 4508054 - 4508647 | 21443.8 |
| ribonuclease g | DN590_22415 | Not Available | Positive | 4508637 - 4510106 | 55515.7 |
| duf3971 domain-containing protein | DN590_22420 | Not Available | Positive | 4510218 - 4514018 | 139147.0 |
| metalloprotease tldd | DN590_22425 | Not Available | Positive | 4514166 - 4515611 | 51211.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

