Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter atp-binding protein | DN590_22275 | Not Available | Negative | 4481136 - 4481894 | 28629.1 |
| amino acid abc transporter permease | DN590_22280 | Not Available | Negative | 4481902 - 4483005 | 41592.8 |
| abc transporter permease subunit | DN590_22285 | Not Available | Negative | 4483015 - 4484196 | 43549.1 |
| amino acid abc transporter substrate-binding protein | DN590_22290 | Not Available | Negative | 4484266 - 4485291 | 36965.8 |
| hypothetical protein | DN590_22295 | Not Available | Negative | 4485752 - 4485973 | 7458.07 |
| multidrug efflux rnd transporter permease subunit | DN590_22300 | Not Available | Negative | 4486245 - 4489358 | 112446.0 |
| efflux rnd transporter periplasmic adaptor subunit | DN590_22305 | Not Available | Negative | 4489370 - 4490530 | 41095.7 |
| acref/envcd operon transcriptional regulator | DN590_22310 | Not Available | Positive | 4490945 - 4491601 | 24887.2 |
| duf2556 domain-containing protein | DN590_22315 | Not Available | Negative | 4491636 - 4491800 | 6533.15 |
| adenine-specific dna-methyltransferase | DN590_22320 | Not Available | Negative | 4491883 - 4492767 | 33734.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

