Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_22165 | Not Available | Positive | 4455556 - 4456449 | 33263.2 |
| 2-keto-3-deoxygluconate transporter | DN590_22170 | Not Available | Negative | 4456480 - 4457478 | 34030.4 |
| proline/glycine betaine transporter prop | DN590_22175 | Not Available | Positive | 4458178 - 4459680 | 54871.3 |
| lpxt activity modulator pmrr | DN590_22180 | Not Available | Positive | 4460146 - 4460235 | 3376.15 |
| two-component system sensor histidine kinase pmrb | DN590_22185 | Not Available | Negative | 4460229 - 4461302 | 40220.9 |
| two-component system response regulator pmra | DN590_22190 | Not Available | Negative | 4461312 - 4461980 | 25051.3 |
| phosphoethanolamine transferase epta | DN590_22195 | Not Available | Negative | 4461985 - 4463622 | 61140.1 |
| arginine/agmatine antiporter | DN590_22200 | Not Available | Negative | 4463769 - 4465106 | 47032.6 |
| arac family transcriptional regulator | DN590_22205 | Not Available | Negative | 4465234 - 4465995 | 28867.1 |
| arginine decarboxylase | DN590_22210 | Not Available | Negative | 4466310 - 4468577 | 84073.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

