Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbon-phosphorus lyase complex subunit phni | DN590_22110 | Not Available | Negative | 4446003 - 4447070 | 38967.1 |
| phosphonate c-p lyase system protein phnh | DN590_22115 | Not Available | Negative | 4447070 - 4447666 | 21337.9 |
| phosphonate c-p lyase system protein phng | DN590_22120 | Not Available | Negative | 4447663 - 4448115 | 16787.1 |
| phosphonate metabolism transcriptional regulator phnf | DN590_22125 | Not Available | Negative | 4448116 - 4448841 | 27683.1 |
| phosphonate abc transporter, permease protein phne | DN590_22130 | Not Available | Negative | 4448862 - 4449641 | 28451.4 |
| phosphonate abc transporter substrate-binding protein | DN590_22135 | Not Available | Negative | 4449775 - 4450791 | 37328.5 |
| phosphonate abc transporter atp-binding protein | DN590_22140 | Not Available | Negative | 4450815 - 4451603 | 29313.2 |
| voc family metalloprotein yjdn | DN590_22145 | Not Available | Negative | 4451736 - 4452185 | 16390.2 |
| alkylphosphonate utilization protein | DN590_22150 | Not Available | Negative | 4452325 - 4452660 | 12261.5 |
| clamp-binding protein crfc | DN590_22160 | Not Available | Positive | 4453202 - 4455559 | 88726.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

