Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rele/pare family toxin | DN590_22060 | Not Available | Negative | 4439914 - 4440201 | 11165.7 |
| antitoxin | DN590_22065 | Not Available | Negative | 4440198 - 4440449 | 9216.04 |
| phosphonate metabolism protein phnp | DN590_22070 | Not Available | Negative | 4440528 - 4441286 | 28054.9 |
| aminoalkylphosphonate n-acetyltransferase | DN590_22075 | Not Available | Negative | 4441295 - 4441729 | 16222.4 |
| ribose 1,5-bisphosphokinase | DN590_22080 | Not Available | Negative | 4441716 - 4442270 | 20393.5 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | DN590_22085 | Not Available | Negative | 4442273 - 4443409 | 42050.0 |
| phosphonate c-p lyase system protein phnl | DN590_22090 | Not Available | Negative | 4443406 - 4444092 | 25116.4 |
| hypothetical protein | DN590_22095 | Not Available | Negative | 4444073 - 4444384 | 11178.5 |
| phosphonate c-p lyase system protein phnk | DN590_22100 | Not Available | Negative | 4444410 - 4445168 | 27756.5 |
| carbon-phosphorus lyase complex subunit phnj | DN590_22105 | Not Available | Negative | 4445165 - 4446013 | 32063.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

