Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor p hydroxylase | DN590_21910 | Not Available | Negative | 4408347 - 4408895 | 21334.9 |
| hypothetical protein | DN590_21915 | Not Available | Negative | 4408895 - 4409704 | 28645.2 |
| penicillin-insensitive murein endopeptidase | DN590_21920 | Not Available | Negative | 4409704 - 4410528 | 30288.5 |
| chorismate synthase | DN590_21925 | Not Available | Negative | 4410532 - 4411617 | 39167.9 |
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | DN590_21930 | Not Available | Negative | 4411657 - 4412589 | 35162.7 |
| endonuclease smrb | DN590_21935 | Not Available | Positive | 4412756 - 4413307 | 21090.6 |
| phosphohistidine phosphatase sixa | DN590_21940 | Not Available | Negative | 4413382 - 4413867 | 17155.9 |
| fatty acid oxidation complex subunit alpha fadj | DN590_21945 | Not Available | Negative | 4414076 - 4416223 | 77221.9 |
| acetyl-coa c-acyltransferase fadi | DN590_21950 | Not Available | Negative | 4416223 - 4417533 | 46384.9 |
| hypothetical protein | DN590_21955 | Not Available | Negative | 4417713 - 4417997 | 10274.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

