Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine abc transporter permease hisq | DN590_21805 | Not Available | Negative | 4384468 - 4385154 | 24580.8 |
| histidine abc transporter substrate-binding protein hisj | DN590_21810 | Not Available | Negative | 4385341 - 4386123 | 28439.9 |
| lysine/arginine/ornithine abc transporter substrate-binding protein argt | DN590_21815 | Not Available | Negative | 4386371 - 4387153 | 28091.3 |
| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | DN590_21820 | Not Available | Negative | 4387441 - 4388010 | 20662.2 |
| laci family transcriptional regulator | DN590_21825 | Not Available | Negative | 4388072 - 4389064 | 36330.0 |
| glycoside hydrolase family 127 protein | DN590_21835 | Not Available | Positive | 4390814 - 4392775 | 74537.9 |
| amidophosphoribosyltransferase | DN590_21840 | Not Available | Negative | 4392878 - 4394395 | 56449.4 |
| colicin v production protein | DN590_21845 | Not Available | Negative | 4394429 - 4394917 | 17991.2 |
| cell division protein dedd | DN590_21850 | Not Available | Negative | 4395131 - 4395799 | 22974.8 |
| bifunctional tetrahydrofolate synthase/dihydrofolate synthase | DN590_21855 | Not Available | Negative | 4395789 - 4397057 | 45552.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

