Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative basic amino acid antiporter yfcc | DN590_21755 | Not Available | Positive | 4376816 - 4378336 | 54706.9 |
| nudix hydrolase yfcd | DN590_21760 | Not Available | Negative | 4378393 - 4378947 | 20848.4 |
| phosphodiesterase | DN590_21765 | Not Available | Negative | 4379004 - 4379555 | 19970.0 |
| glutathione transferase | DN590_21770 | Not Available | Negative | 4379611 - 4380255 | 24126.7 |
| gsh-dependent disulfide bond oxidoreductase | DN590_21775 | Not Available | Positive | 4380390 - 4381025 | 24596.3 |
| dihydroneopterin triphosphate 2'-epimerase | DN590_21780 | Not Available | Positive | 4381080 - 4381442 | 13998.8 |
| tigr01777 family protein | DN590_21785 | Not Available | Positive | 4381463 - 4382356 | 32831.0 |
| n-acetyltransferase | DN590_21790 | Not Available | Positive | 4382428 - 4382943 | 19312.4 |
| histidine abc transporter atp-binding protein hisp | DN590_21795 | Not Available | Negative | 4382977 - 4383750 | 28494.6 |
| histidine abc transporter permease hism | DN590_21800 | Not Available | Negative | 4383764 - 4384471 | 26492.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

