Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_21290 | Not Available | Negative | 4289467 - 4289811 | 12488.9 |
| duf1571 domain-containing protein | DN590_21295 | Not Available | Positive | 4290016 - 4290705 | 25208.2 |
| polyketide cyclase | DN590_21300 | Not Available | Positive | 4290719 - 4291189 | 18131.7 |
| transglutaminase family protein | DN590_21305 | Not Available | Positive | 4291398 - 4292540 | 42130.9 |
| hypothetical protein | DN590_21310 | Not Available | Positive | 4292518 - 4292874 | 13280.7 |
| heavy-metal-associated domain-containing protein | DN590_21315 | Not Available | Positive | 4292871 - 4293152 | 10133.5 |
| yeca family protein | DN590_21320 | Not Available | Positive | 4293362 - 4294027 | 25035.6 |
| tyrosine transporter tyrp | DN590_21325 | Not Available | Negative | 4294054 - 4295265 | 42764.6 |
| duf2492 family protein | DN590_21330 | Not Available | Positive | 4295491 - 4295730 | 8648.2 |
| non-heme ferritin | DN590_21335 | Not Available | Negative | 4295776 - 4296273 | 19291.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

