Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein | DN590_21185 | Not Available | Positive | 4273035 - 4273448 | 15063.2 |
| alpha-amylase | DN590_21190 | Not Available | Negative | 4273489 - 4274976 | 56498.8 |
| flagella biosynthesis regulatory protein flit | DN590_21195 | Not Available | Negative | 4275045 - 4275416 | 13963.8 |
| flagellar protein flis | DN590_21200 | Not Available | Negative | 4275416 - 4275823 | 14677.4 |
| flagellar filament capping protein flid | DN590_21205 | Not Available | Negative | 4275839 - 4277251 | 50377.1 |
| flagellin flic | DN590_21215 | Not Available | Positive | 4277507 - 4279141 | 56040.7 |
| rna polymerase sigma factor flia | DN590_21220 | Not Available | Positive | 4279304 - 4280023 | 27461.8 |
| flagella biosynthesis regulatory protein fliz | DN590_21225 | Not Available | Positive | 4280081 - 4280632 | 21745.0 |
| cystine abc transporter substrate-binding protein | DN590_21230 | Not Available | Positive | 4280733 - 4281533 | 29000.1 |
| d-cysteine desulfhydrase | DN590_21235 | Not Available | Positive | 4281641 - 4282627 | 35176.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

