Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2158 domain-containing protein | DN590_21085 | Not Available | Positive | 4258303 - 4258488 | 6890.17 |
| duf2525 domain-containing protein | DN590_21090 | Not Available | Negative | 4258695 - 4258922 | 8677.87 |
| protein dsrb | DN590_21095 | Not Available | Positive | 4259032 - 4259274 | 9029.81 |
| transcriptional regulator rcsa | DN590_21100 | Not Available | Negative | 4259329 - 4259952 | 23414.7 |
| flagellar type iii secretion system protein flir | DN590_21105 | Not Available | Negative | 4260240 - 4261025 | 28413.3 |
| flagellar biosynthetic protein fliq | DN590_21110 | Not Available | Negative | 4261034 - 4261303 | 9590.45 |
| flagellar biosynthetic protein flip | DN590_21115 | Not Available | Negative | 4261313 - 4262050 | 26935.1 |
| flagellar type iii secretion system protein flio | DN590_21120 | Not Available | Negative | 4262050 - 4262427 | 13012.1 |
| flagellar motor switch protein flin | DN590_21125 | Not Available | Negative | 4262427 - 4262840 | 14797.8 |
| flagellar motor switch protein flim | DN590_21130 | Not Available | Negative | 4262837 - 4263841 | 37937.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

