Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyltransferase | DN590_20980 | Not Available | Negative | 4241776 - 4243785 | 74667.2 |
| ycii family protein | DN590_20985 | Not Available | Negative | 4244081 - 4244377 | 10550.5 |
| tonb system transport protein tonb | DN590_20990 | Not Available | Positive | 4244602 - 4245321 | 26095.7 |
| acyl-coa thioester hydrolase ycia | DN590_20995 | Not Available | Negative | 4245386 - 4245787 | 14394.6 |
| septation protein a | DN590_21000 | Not Available | Negative | 4245953 - 4246492 | 20769.1 |
| upf0259 family protein | DN590_21005 | Not Available | Negative | 4246547 - 4247290 | 26522.8 |
| outer membrane protein ompw | DN590_21010 | Not Available | Positive | 4247689 - 4248327 | 22983.2 |
| glycosyl transferase family 2 | DN590_21015 | Not Available | Negative | 4248630 - 4248890 | 9495.12 |
| dini family protein | DN590_21020 | Not Available | Negative | 4249069 - 4249311 | 9265.2 |
| lexa family transcriptional regulator | DN590_21030 | Not Available | Positive | 4249632 - 4250021 | 14291.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

