Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptide abc transporter substrate-binding protein oppa | DN590_20930 | Not Available | Positive | 4231854 - 4233485 | 61483.6 |
| hypothetical protein | DN590_20935 | Not Available | Negative | 4233504 - 4233698 | 7669.7 |
| oligopeptide abc transporter permease oppb | DN590_20940 | Not Available | Positive | 4233718 - 4234638 | 33362.0 |
| oligopeptide abc transporter permease oppc | DN590_20945 | Not Available | Positive | 4234653 - 4235561 | 33125.1 |
| oligopeptide abc transporter atp-binding protein oppd | DN590_20950 | Not Available | Positive | 4235573 - 4236586 | 36985.5 |
| oligopeptide abc transporter atp-binding protein oppf | DN590_20955 | Not Available | Positive | 4236583 - 4237587 | 37191.7 |
| transporter | DN590_20960 | Not Available | Positive | 4237633 - 4238469 | 32020.0 |
| duf440 family protein | DN590_20965 | Not Available | Negative | 4238507 - 4238836 | 12715.7 |
| cardiolipin synthase | DN590_20970 | Not Available | Negative | 4238871 - 4240331 | 54697.3 |
| serine acetyltransferase | DN590_20975 | Not Available | Positive | 4240884 - 4241498 | 22080.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

