Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-8-phosphooctulonate synthase | DN590_20765 | Not Available | Positive | 4199416 - 4200270 | 30754.2 |
| oxidoreductase | DN590_20770 | Not Available | Negative | 4200338 - 4201051 | 24676.3 |
| tetr/acrr family transcriptional regulator | DN590_20775 | Not Available | Positive | 4201124 - 4201714 | 21633.7 |
| amidohydrolase | DN590_20780 | Not Available | Positive | 4201743 - 4203434 | 61865.8 |
| sodium-potassium/proton antiporter chaa | DN590_20785 | Not Available | Negative | 4203489 - 4204589 | 39172.9 |
| putative cation transport regulator chab | DN590_20790 | Not Available | Positive | 4204990 - 4205220 | 8905.12 |
| gamma-glutamylcyclotransferase | DN590_20795 | Not Available | Positive | 4205417 - 4206112 | 25357.7 |
| duf1883 domain-containing protein | DN590_20800 | Not Available | Negative | 4206167 - 4206412 | 9050.8 |
| hypothetical protein | DN590_20805 | Not Available | Negative | 4206674 - 4207027 | 12523.3 |
| invasin | DN590_20810 | Not Available | Positive | 4207246 - 4208631 | 51643.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

