Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferrichrome porin fhua | DN590_20665 | Not Available | Negative | 4174305 - 4176554 | 82433.6 |
| bifunctional glycosyl transferase/transpeptidase | DN590_20670 | Not Available | Negative | 4176860 - 4179400 | 94548.4 |
| atp-dependent helicase hrpb | DN590_20675 | Not Available | Negative | 4179536 - 4182010 | 90707.0 |
| rna 2',3'-cyclic phosphodiesterase | DN590_20680 | Not Available | Positive | 4182039 - 4182569 | 19780.9 |
| dna/rna nuclease sfsa | DN590_20685 | Not Available | Positive | 4182585 - 4183289 | 26127.4 |
| rna polymerase-binding transcription factor dksa | DN590_20690 | Not Available | Positive | 4183467 - 4183922 | 17544.7 |
| trna glutamyl-q(34) synthetase gluqrs | DN590_20695 | Not Available | Positive | 4183993 - 4184889 | 33831.1 |
| polynucleotide adenylyltransferase | DN590_20700 | Not Available | Positive | 4184940 - 4186358 | 54793.1 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DN590_20705 | Not Available | Positive | 4186469 - 4186960 | 18549.4 |
| diaminobutyrate--2-oxoglutarate transaminase | DN590_20710 | Not Available | Positive | 4187297 - 4188682 | 49619.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

