Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dgtpase | DN590_20615 | Not Available | Negative | 4163233 - 4164750 | 59314.9 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | DN590_20620 | Not Available | Positive | 4164834 - 4165532 | 24289.4 |
| vitamin b12 abc transporter substrate-binding protein btuf | DN590_20625 | Not Available | Positive | 4165525 - 4166325 | 29063.2 |
| hypothetical protein | DN590_20630 | Not Available | Positive | 4166363 - 4166986 | 22074.1 |
| iron-sulfur cluster insertion protein erpa | DN590_20635 | Not Available | Negative | 4167106 - 4167450 | 12084.2 |
| h(+)/cl(-) exchange transporter clca | DN590_20640 | Not Available | Negative | 4167532 - 4168953 | 50289.9 |
| glutamate-1-semialdehyde-2,1-aminomutase | DN590_20645 | Not Available | Positive | 4169122 - 4170402 | 45458.8 |
| fe(3+)-hydroxamate abc transporter permease fhub | DN590_20650 | Not Available | Negative | 4170516 - 4172555 | 72293.7 |
| fe(3+)-hydroxamate abc transporter substrate-binding protein fhud | DN590_20655 | Not Available | Negative | 4172570 - 4173460 | 33016.2 |
| fe3+-hydroxamate abc transporter atp-binding protein fhuc | DN590_20660 | Not Available | Negative | 4173460 - 4174257 | 29020.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

