Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | DN590_20560 | Not Available | Negative | 4151613 - 4152170 | 20551.6 |
| ump kinase | DN590_20565 | Not Available | Negative | 4152310 - 4153035 | 25984.9 |
| elongation factor ts | DN590_20570 | Not Available | Negative | 4153181 - 4154032 | 30401.6 |
| 30s ribosomal protein s2 | DN590_20575 | Not Available | Negative | 4154169 - 4154894 | 26804.2 |
| type i methionyl aminopeptidase | DN590_20580 | Not Available | Positive | 4155344 - 4156138 | 29234.3 |
| [protein-pii] uridylyltransferase | DN590_20585 | Not Available | Positive | 4156252 - 4158924 | 102512.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | DN590_20590 | Not Available | Positive | 4158956 - 4159780 | 29894.8 |
| duf3461 family protein | DN590_20595 | Not Available | Positive | 4159890 - 4160276 | 15097.0 |
| cdar family transcriptional regulator | DN590_20600 | Not Available | Negative | 4160364 - 4161521 | 43669.2 |
| serine endoprotease degp | DN590_20605 | Not Available | Negative | 4161670 - 4163103 | 49508.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

