Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DN590_20510 | Not Available | Negative | 4141618 - 4142406 | 28165.8 |
| beta-hydroxyacyl-acp dehydratase | DN590_20515 | Not Available | Negative | 4142410 - 4142865 | 17043.0 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | DN590_20520 | Not Available | Negative | 4142969 - 4143994 | 35993.6 |
| molecular chaperone skp | DN590_20525 | Not Available | Negative | 4143998 - 4144483 | 17712.2 |
| outer membrane protein assembly factor bama | DN590_20530 | Not Available | Negative | 4144606 - 4147023 | 89623.6 |
| sigma e protease regulator rsep | DN590_20535 | Not Available | Negative | 4147053 - 4148405 | 49256.2 |
| phosphatidate cytidylyltransferase | DN590_20540 | Not Available | Negative | 4148417 - 4149274 | 31458.5 |
| (2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase | DN590_20545 | Not Available | Negative | 4149287 - 4150045 | 28388.7 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DN590_20550 | Not Available | Negative | 4150233 - 4151429 | 43358.4 |
| hypothetical protein | DN590_20555 | Not Available | Positive | 4151413 - 4151703 | 10643.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

