Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-galactopyranose mutase | DN590_20405 | Not Available | Negative | 4122075 - 4122211 | 4995.96 |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | DN590_20415 | Not Available | Negative | 4122561 - 4123127 | 21008.1 |
| d-methionine abc transporter, atp-binding protein | DN590_20420 | Not Available | Positive | 4123317 - 4124348 | 37784.7 |
| d-methionine abc transporter permease meti | DN590_20425 | Not Available | Positive | 4124341 - 4124994 | 23292.6 |
| metq/nlpa family lipoprotein | DN590_20430 | Not Available | Positive | 4125039 - 4125854 | 29434.2 |
| rcs stress response system protein rcsf | DN590_20435 | Not Available | Positive | 4125971 - 4126375 | 14113.2 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | DN590_20440 | Not Available | Positive | 4126372 - 4127079 | 26513.8 |
| proline--trna ligase | DN590_20445 | Not Available | Positive | 4127193 - 4128911 | 63586.2 |
| copper homeostasis/adhesion lipoprotein nlpe | DN590_20450 | Not Available | Negative | 4128956 - 4129654 | 25676.7 |
| aminoacyl-trna hydrolase | DN590_20455 | Not Available | Negative | 4129685 - 4130107 | 15668.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

