Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DN590_20350 | Not Available | Positive | 4112037 - 4113104 | 40305.4 |
| imidazole glycerol phosphate synthase subunit hish | DN590_20355 | Not Available | Positive | 4113104 - 4113694 | 21607.1 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DN590_20360 | Not Available | Positive | 4113694 - 4114431 | 25908.0 |
| imidazole glycerol phosphate synthase subunit hisf | DN590_20365 | Not Available | Positive | 4114413 - 4115189 | 28470.0 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase | DN590_20370 | Not Available | Positive | 4115183 - 4115794 | 22689.1 |
| lps o-antigen chain length determinant protein wzzb | DN590_20375 | Not Available | Negative | 4115850 - 4116833 | 36158.6 |
| protein capi | DN590_20385 | Not Available | Positive | 4117232 - 4118236 | 37550.7 |
| udp-glucose 6-dehydrogenase | DN590_20390 | Not Available | Negative | 4118296 - 4119462 | 43494.0 |
| phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating) | DN590_20395 | Not Available | Negative | 4119661 - 4121067 | 51422.1 |
| glycosyl transferase 2 family protein | DN590_20400 | Not Available | Negative | 4121164 - 4122078 | 34573.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

