Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase | DN590_20050 | Not Available | Negative | 4058306 - 4059235 | 34033.0 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | DN590_20055 | Not Available | Negative | 4059363 - 4060427 | 36315.5 |
| adenosylcobinamide-gdp ribazoletransferase | DN590_20060 | Not Available | Negative | 4060452 - 4061195 | 26256.4 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | DN590_20065 | Not Available | Negative | 4061192 - 4061737 | 20014.0 |
| cobyric acid synthase cobq | DN590_20070 | Not Available | Negative | 4061734 - 4063254 | 55230.5 |
| energy-coupling factor abc transporter atp-binding protein | DN590_20075 | Not Available | Negative | 4063251 - 4064066 | 30033.2 |
| energy-coupling factor abc transporter transmembrane protein | DN590_20080 | Not Available | Negative | 4064075 - 4064752 | 25932.7 |
| energy-coupling factor abc transporter substrate-binding protein | DN590_20085 | Not Available | Negative | 4064739 - 4065020 | 10273.4 |
| cobalamin biosynthesis protein cbim | DN590_20090 | Not Available | Negative | 4065023 - 4065760 | 26313.5 |
| precorrin-2 c(20)-methyltransferase | DN590_20095 | Not Available | Negative | 4065757 - 4066470 | 25922.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

