Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_19750 | Not Available | Positive | 3987838 - 3988041 | 7671.52 |
| porin ompc | DN590_19755 | Not Available | Negative | 3988043 - 3989158 | 40736.8 |
| phosphotransferase rcsd | DN590_19760 | Not Available | Positive | 3989897 - 3992566 | 100008.0 |
| transcriptional regulator rcsb | DN590_19765 | Not Available | Positive | 3992583 - 3993233 | 23719.1 |
| two-component system sensor histidine kinase rcsc | DN590_19770 | Not Available | Negative | 3993352 - 3996198 | 106193.0 |
| dna gyrase subunit a | DN590_19775 | Not Available | Negative | 3996319 - 3998958 | 97164.0 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | DN590_19780 | Not Available | Positive | 3999117 - 3999845 | 26996.6 |
| ribonucleoside-diphosphate reductase subunit alpha | DN590_19785 | Not Available | Positive | 4000266 - 4002551 | 85696.8 |
| ribonucleotide-diphosphate reductase subunit beta | DN590_19790 | Not Available | Positive | 4002662 - 4003792 | 43508.8 |
| 2fe-2s ferredoxin-like protein | DN590_19795 | Not Available | Positive | 4003792 - 4004046 | 9306.22 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

