Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsc family reductase | DN590_00455 | Not Available | Positive | 86997 - 87353 | 13422.2 |
| succinyl-diaminopimelate desuccinylase | DN590_00460 | Not Available | Positive | 87357 - 88484 | 41449.7 |
| hypothetical protein | DN590_00465 | Not Available | Positive | 88512 - 88709 | 7942.62 |
| esterase | DN590_00470 | Not Available | Negative | 88813 - 89511 | 25240.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 89937 - 90052 | Not Available |
| trna cytosine(34) acetyltransferase tmca | DN590_00475 | Not Available | Negative | 89585 - 91561 | 73026.5 |
| neutral zinc metallopeptidase | DN590_00480 | Not Available | Negative | 91616 - 92482 | 31358.8 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DN590_00485 | Not Available | Negative | 92611 - 93324 | 27026.6 |
| outer membrane protein assembly factor bamc | DN590_00490 | Not Available | Negative | 93436 - 94470 | 36899.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DN590_00495 | Not Available | Negative | 94487 - 95365 | 31289.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

