Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 10 protein | DN590_19535 | Not Available | Negative | 3938844 - 3940211 | 51387.1 |
| duf2132 domain-containing protein | DN590_19540 | Not Available | Negative | 3940224 - 3940511 | 10876.9 |
| hlyd family type i secretion periplasmic adaptor subunit | DN590_19545 | Not Available | Negative | 3940646 - 3941971 | 49063.4 |
| type i secretion system permease/atpase | DN590_19550 | Not Available | Negative | 3941974 - 3943713 | 62985.5 |
| heme peroxidase | DN590_19555 | Not Available | Negative | 3943724 - 3949057 | 187593.0 |
| crp/fnr family transcriptional regulator | DN590_19565 | Not Available | Positive | 3951114 - 3951743 | 24332.7 |
| hypothetical protein | DN590_19570 | Not Available | Negative | 3951860 - 3952246 | 14577.5 |
| mbl fold metallo-hydrolase | DN590_19575 | Not Available | Positive | 3952490 - 3954472 | 72531.0 |
| duf1778 domain-containing protein | DN590_19580 | Not Available | Positive | 3954617 - 3954883 | 10160.2 |
| gnat family n-acetyltransferase | DN590_19585 | Not Available | Positive | 3954871 - 3955353 | 17575.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

