Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DN590_19485 | Not Available | Negative | 3928171 - 3929157 | 36048.0 |
| d,d-dipeptide abc transporter permease | DN590_19490 | Not Available | Negative | 3929154 - 3930050 | 31977.9 |
| abc transporter permease | DN590_19495 | Not Available | Negative | 3930047 - 3931069 | 37464.5 |
| abc transporter substrate-binding protein | DN590_19500 | Not Available | Negative | 3931114 - 3932676 | 57345.1 |
| d-alanyl-d-alanine dipeptidase | DN590_19505 | Not Available | Negative | 3932692 - 3933279 | 21572.7 |
| murr/rpir family transcriptional regulator | DN590_19510 | Not Available | Negative | 3933294 - 3934160 | 32406.7 |
| acid-activated periplasmic chaperone hdeb | DN590_19515 | Not Available | Positive | 3934561 - 3934890 | 11967.2 |
| methyl-accepting chemotaxis protein | DN590_19520 | Not Available | Positive | 3935046 - 3936992 | 69747.0 |
| xre family transcriptional regulator | DN590_19525 | Not Available | Positive | 3937169 - 3937483 | 11509.0 |
| type ii toxin-antitoxin system hipa family toxin | DN590_19530 | Not Available | Positive | 3937476 - 3938747 | 47261.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

