Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stationary-phase-induced ribosome-associated protein | DN590_19435 | Not Available | Negative | 3919592 - 3919732 | 5269.33 |
| osmc family peroxiredoxin | DN590_19440 | Not Available | Positive | 3919960 - 3920391 | 15066.8 |
| 3-hydroxybutyrate dehydrogenase | DN590_19445 | Not Available | Negative | 3920476 - 3921246 | 26928.2 |
| gntp family permease | DN590_19450 | Not Available | Negative | 3921258 - 3922649 | 48565.5 |
| 3-hydroxyacyl-coa dehydrogenase family protein | DN590_19455 | Not Available | Negative | 3922696 - 3923619 | 33672.9 |
| acetyl-coa c-acetyltransferase | DN590_19460 | Not Available | Negative | 3923609 - 3924814 | 41333.6 |
| coa transferase subunit b | DN590_19465 | Not Available | Negative | 3924825 - 3925481 | 23148.5 |
| succinyl-coa--3-ketoacid-coa transferase | DN590_19470 | Not Available | Negative | 3925483 - 3926190 | 25438.6 |
| lysr family transcriptional regulator | DN590_19475 | Not Available | Positive | 3926333 - 3927223 | 32658.8 |
| atp-binding cassette domain-containing protein | DN590_19480 | Not Available | Negative | 3927243 - 3928178 | 34775.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

