Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l19 | DN590_19060 | Not Available | Negative | 3848885 - 3849232 | 13134.0 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DN590_19065 | Not Available | Negative | 3849272 - 3850039 | 28465.1 |
| ribosome maturation factor rimm | DN590_19070 | Not Available | Negative | 3850084 - 3850632 | 20473.4 |
| 30s ribosomal protein s16 | DN590_19075 | Not Available | Negative | 3850651 - 3850899 | 9165.04 |
| signal recognition particle protein | DN590_19080 | Not Available | Negative | 3851153 - 3852514 | 49746.4 |
| inner membrane protein ypjd | DN590_19090 | Not Available | Positive | 3852680 - 3853471 | 29215.8 |
| duf21 domain-containing protein | DN590_19095 | Not Available | Positive | 3853490 - 3854779 | 48118.1 |
| nucleotide exchange factor grpe | DN590_19100 | Not Available | Negative | 3854830 - 3855558 | 26808.1 |
| nad(+) kinase | DN590_19105 | Not Available | Positive | 3855547 - 3856425 | 32567.3 |
| dna repair protein recn | DN590_19110 | Not Available | Positive | 3856511 - 3858172 | 61356.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

