Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-associated translation inhibitor raia | DN590_19005 | Not Available | Positive | 3839557 - 3839895 | 12696.2 |
| hypothetical protein | DN590_19010 | Not Available | Positive | 3839999 - 3840046 | 1886.4 |
| bifunctional chorismate mutase/prephenate dehydratase | DN590_19015 | Not Available | Positive | 3840146 - 3841306 | 42949.6 |
| bifunctional chorismate mutase/prephenate dehydrogenase | DN590_19020 | Not Available | Negative | 3841403 - 3842524 | 41913.7 |
| 3-deoxy-7-phosphoheptulonate synthase arof | DN590_19025 | Not Available | Negative | 3842535 - 3843605 | 38902.3 |
| duf2799 domain-containing protein | DN590_19030 | Not Available | Positive | 3843821 - 3844195 | 13796.9 |
| yfir family protein | DN590_19035 | Not Available | Positive | 3844354 - 3844872 | 19016.2 |
| diguanylate cyclase | DN590_19040 | Not Available | Positive | 3844865 - 3846091 | 45906.2 |
| ompa family protein | DN590_19045 | Not Available | Positive | 3846104 - 3846586 | 17496.9 |
| hypothetical protein | DN590_19050 | Not Available | Negative | 3846845 - 3847771 | 34888.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

