Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbonate dehydratase | DN590_18900 | Not Available | Negative | 3818826 - 3819488 | 25157.1 |
| abc transporter atp-binding protein | DN590_18905 | Not Available | Positive | 3819597 - 3820523 | 34639.1 |
| abc transporter permease | DN590_18910 | Not Available | Positive | 3820520 - 3821290 | 28592.0 |
| pts sugar transporter subunit iia | DN590_18915 | Not Available | Positive | 3821394 - 3821834 | 16452.9 |
| polysaccharide deacetylase family protein | DN590_18920 | Not Available | Positive | 3821896 - 3823125 | 46567.8 |
| aspartate 1-decarboxylase | DN590_18925 | Not Available | Negative | 3823132 - 3823512 | 13873.5 |
| pantoate--beta-alanine ligase | DN590_18935 | Not Available | Negative | 3823608 - 3824462 | 31734.7 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DN590_18940 | Not Available | Negative | 3824541 - 3825335 | 28240.2 |
| fimbrial-like adhesin | DN590_18945 | Not Available | Negative | 3825457 - 3826725 | 44282.6 |
| fimbrial protein | DN590_18950 | Not Available | Negative | 3826739 - 3827317 | 20718.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

