Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase regulator ampe | DN590_18790 | Not Available | Positive | 3791268 - 3792122 | 32032.7 |
| alpha-n-arabinofuranosidase | DN590_18795 | Not Available | Negative | 3792215 - 3793165 | 36446.5 |
| mfs transporter | DN590_18800 | Not Available | Negative | 3793165 - 3794571 | 52980.8 |
| aromatic amino acid transporter arop | DN590_18805 | Not Available | Negative | 3794730 - 3796103 | 49554.9 |
| pyruvate dehydrogenase complex transcriptional repressor pdhr | DN590_18810 | Not Available | Positive | 3796668 - 3797432 | 29320.1 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | DN590_18815 | Not Available | Positive | 3797596 - 3800259 | 99658.1 |
| pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | DN590_18820 | Not Available | Positive | 3800274 - 3802163 | 65719.1 |
| dihydrolipoyl dehydrogenase | DN590_18825 | Not Available | Positive | 3802339 - 3803763 | 50570.3 |
| duf2950 family protein | DN590_18830 | Not Available | Negative | 3803884 - 3804678 | 29163.3 |
| duf3300 domain-containing protein | DN590_18835 | Not Available | Negative | 3804689 - 3806275 | 58015.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

