Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | DN590_18525 | Not Available | Negative | 3738450 - 3740441 | 72048.3 |
| metalloprotease | DN590_18530 | Not Available | Positive | 3740721 - 3741479 | 26602.6 |
| agmatinase | DN590_18535 | Not Available | Negative | 3741581 - 3742501 | 33547.9 |
| hypothetical protein | DN590_18540 | Not Available | Negative | 3742633 - 3743364 | 26268.6 |
| biosynthetic arginine decarboxylase | DN590_18545 | Not Available | Negative | 3743517 - 3745493 | 73854.4 |
| virulence promoting factor | DN590_18550 | Not Available | Negative | 3745486 - 3745632 | 5626.21 |
| methionine adenosyltransferase | DN590_18565 | Not Available | Positive | 3746411 - 3747565 | 41945.9 |
| sugar porter family mfs transporter | DN590_18570 | Not Available | Positive | 3747964 - 3749358 | 50949.6 |
| sprt family zinc-dependent metalloprotease | DN590_18575 | Not Available | Positive | 3749435 - 3749932 | 19364.7 |
| deoxyribonuclease i | DN590_18580 | Not Available | Positive | 3750027 - 3750734 | 26704.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

