Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xaa-pro aminopeptidase | DN590_18360 | Not Available | Negative | 3709944 - 3711269 | 49492.9 |
| yeca family protein | DN590_18365 | Not Available | Negative | 3711294 - 3711878 | 21416.1 |
| cell division protein zapa | DN590_18375 | Not Available | Positive | 3712040 - 3712369 | 12551.9 |
| 5-formyltetrahydrofolate cyclo-ligase | DN590_18385 | Not Available | Positive | 3712614 - 3713210 | 22937.8 |
| phosphoglycerate dehydrogenase | DN590_18390 | Not Available | Negative | 3713355 - 3714587 | 44003.2 |
| ribose-5-phosphate isomerase rpia | DN590_18395 | Not Available | Negative | 3714859 - 3715518 | 22789.7 |
| lysr family transcriptional regulator argp | DN590_18400 | Not Available | Positive | 3715689 - 3716582 | 33414.5 |
| methylmalonyl-coa mutase | DN590_18410 | Not Available | Positive | 3716816 - 3718960 | 77991.8 |
| methylmalonyl co-a mutase-associated gtpase meab | DN590_18415 | Not Available | Positive | 3718953 - 3719948 | 36528.0 |
| methylmalonyl-coa decarboxylase | DN590_18420 | Not Available | Positive | 3719959 - 3720744 | 29277.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

