Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isopentenyl-diphosphate delta-isomerase | DN590_18250 | Not Available | Positive | 3688617 - 3689171 | 20692.6 |
| lysine--trna ligase | DN590_18255 | Not Available | Negative | 3689249 - 3690766 | 57674.7 |
| peptide chain release factor 2 | DN590_18260 | Not Available | Negative | 3690776 - 3691874 | 41210.0 |
| single-stranded-dna-specific exonuclease recj | DN590_18265 | Not Available | Negative | 3691966 - 3693699 | 63129.2 |
| bifunctional protein-disulfide isomerase/oxidoreductase dsbc | DN590_18270 | Not Available | Negative | 3693705 - 3694418 | 25878.4 |
| site-specific tyrosine recombinase xerd | DN590_18275 | Not Available | Negative | 3694442 - 3695338 | 34170.1 |
| flavodoxin fldb | DN590_18280 | Not Available | Positive | 3695452 - 3695973 | 19716.3 |
| hypothetical protein | DN590_18285 | Not Available | Negative | 3696075 - 3696482 | 15915.8 |
| fad assembly factor sdhe | DN590_18290 | Not Available | Negative | 3696463 - 3696729 | 10615.8 |
| pp_03596 | DN590_18300 | Not Available | Positive | 3696987 - 3697970 | Not Available |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

