Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_18200 | Not Available | Negative | 3680426 - 3680686 | 10022.4 |
| hypothetical protein | DN590_18205 | Not Available | Negative | 3680936 - 3681217 | 10535.7 |
| hypothetical protein | DN590_18210 | Not Available | Negative | 3681521 - 3682780 | 48797.1 |
| integrase | DN590_18215 | Not Available | Positive | 3684688 - 3685266 | 21636.0 |
| hypothetical protein | DN590_18220 | Not Available | Positive | 3685260 - 3685469 | 7735.27 |
| hypothetical protein | DN590_18225 | Not Available | Positive | 3685552 - 3685821 | 10014.5 |
| hypothetical protein | DN590_18230 | Not Available | Negative | 3685884 - 3686381 | 18027.7 |
| hypothetical protein | DN590_18235 | Not Available | Negative | 3686405 - 3686971 | 20333.2 |
| Trna-gly | Not Available | Not Available | Positive | 3687539 - 3687612 | Not Available |
| lysm peptidoglycan-binding domain-containing protein | DN590_18245 | Not Available | Negative | 3687692 - 3688450 | 26607.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

